Runtimes for the inDrop BMCs dataset

UMI collisions

times_coll <- sapply(1:10, function(i) TimeCollisions(holder))
mean(times_coll, trim=0.2)

[1] 10.55667

Error corrections directional

times_directional <- sapply(1:10, function(i) TimeUmiErrors(holder$reads_per_umi_per_cell, 
                                                            'directional', mc.cores=10))
print(times_directional)

elapsed elapsed elapsed elapsed elapsed elapsed elapsed elapsed elapsed 
 55.335  49.796  52.496  55.232  53.628  36.979  43.250  43.898  43.210 
elapsed 
 38.635 

mean(times_directional, trim=0.1)

[1] 47.51813

Error corrections Bayesian

times_bayesian <- sapply(1:5, function(i) TimeUmiErrors(holder$reads_per_umi_per_cell, 
                                                        mc.cores=10))
print(times_bayesian)

elapsed elapsed elapsed elapsed elapsed 
617.838 553.578 642.265 591.075 657.493 

mean(times_bayesian, trim=0.1)

[1] 612.4498

Quality scoring

times_quality <- sapply(1:10, function(i) TimeQuality(holder, mit.chromosome.name='chrM', 
                                                      tags.data=tag_stats))
print(times_quality)

elapsed elapsed elapsed elapsed elapsed elapsed elapsed elapsed elapsed 
 11.648  13.393  10.490  10.778  14.109  10.453  12.177  22.946   9.951 
elapsed 
  9.431 

mean(times_quality, trim=0.1)

[1] 11.62487

Session information